PANTHER Publications
How to cite PANTHER
- Always cite
PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees.
Huaiyu Mi, Anushya Muruganujan and Paul D. Thomas
Nucl. Acids Res. (2012) doi: 10.1093/nar/gks1118
- PANTHER Classification System
Panther classification system - PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium.
Huaiyu Mi, Qing Dong, Anushya Muruganujan, Pascale Gaudet, Suzanna Lewis and Paul D. Thomas
Nucl. Acids Res. 38: D204-D210.
- PANTHER Tools
Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools
Paul D. Thomas, Anish Kejariwal, Nan Guo, Huaiyu Mi, Michael J. Campbell, Anushya Muruganujan and Betty Lazareva-Ulitsky
Nucl. Acids Res. (1 July 2006) 34 (suppl 2): W645-W650.
- PANTHER pathway
Protein Networks and Pathway Analysis
Huaiyu Mi and Paul Thomas
Methods in Molecular Biology, 2009, Volume 563, Part 2, 123-140, DOI: 10.1007/978-1-60761-175-2_7
- GIGA - PANTHER tree building algorithm
GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
Paul D Thomas
BMC Bioinformatics 2010, 11:312
- Coding SNP analysis tool
Coding single-nucleotide polymorphisms associated with complex vs. Mendelian disease: Evolutionary evidence for differences e
Paul D Thomas and Anish Kejariwal
PNAS October 26, 2004 vol. 101 no. 43 15398-15403