PANTHER Publications
- Paul D Thomas, Huaiyu Mi and Suzanna Lewis. 2007.
Ontology annotation: mapping genomic regions to biological function Curr. Opin. Chem. Biol. . 11(1): 4-11. - Huaiyu Mi, Nan Guo, Anish Kejariwal and Paul D. Thomas. 2007. PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways. Nucl. Acids Res.. 35: D247-D252.
- Nicola J. Mulder, et al. 2007. New developments in the InterPro database. Nucl. Acids Res.. 35: D224-D228.
- Paul D. Thomas, Anish Kejariwal, Nan Guo, Huaiyu Mi, Michael J. Campbell, Anushya Muruganujan, and Betty Lazareva-Ulitsky. 2006. Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools. Nucl. Acids Res. 34: W645-W650.
- Liam R. Brunham, Roshni R. Singaraja, Terry D. Pape, Anish Kejariwal, Paul D. Thomas, Michael R. Hayden. 2005. Accurate Prediction of the Functional Significance of Single Nucleotide Polymorphisms and Mutations in the ABCA1 Gene. PLoS, 1(6): e83.
- Betty Lazareva-Ulitsky, Karen Diemer L., and Paul D. Thomas. 2005. On the quality of
tree-based protein classification. Bioinformatics.
Supplementary Materials - Huaiyu Mi, Betty Lazareva-Ulitsky, Rozina Loo, Anish Kejariwal, Jody Vandergriff, Steven Rabkin, Nan Guo, Anushya Muruganujan, Olivier Doremieux, Michael J. Campbell, Hiroaki Kitano and Paul D. Thomas. 2005. The PANTHER database of protein families, subfamilies, functions and pathways. Nucl. Acids. Res., 31:334-341.
- Paul D. Thomas and Anish Kejariwal. 2004. Coding single-nucleotide polymorphisms associated with complex vs. Mendelian disease: Evolutionary evidence for differences in molecular effects. Proc. Natl. Acad. Sci., 101(43):15398-403.
- Paul D. Thomas, Michael J. Campbell, Anish Kejariwal, Huaiyu Mi, Brian Karlak, Robin
Daverman, Karen Diemer, Anushya Muruganujan, Apurva Narechania. 2003. PANTHER: a library of protein
families and subfamilies indexed by function. Genome Res., 13: 2129-2141
.
Supplementary Materials - Huaiyu Mi, Jody Vandergriff, Michael Campbell, Apurva Narechania, William Majoros, Suzanna
Lewis,
Paul D. Thomas, Michael Ashburner. 2003. Assessment of genome-wide protein function classification for
Drosophila
melanogaster. Genome
Res., 13: 2118-2128.
Supplementary Materials - Paul D. Thomas, Anish Kejariwal, Michael J. Campbell, Huaiyu Mi, Karen Diemer, Nan Guo, Istvan Ladunga, Betty Ulitsky-Lazareva, Anushya Muruganujan, Steven Rabkin, Jody A. Vandergriff and Olivier Doremieux. 2003. PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucl. Acids. Res., 31:334-341.
- Andrew G. Clark, Stephen Glanowski, Rasmus Nielsen, Paul D. Thomas, Anish Kejariwal, Melissa A. Todd, David M. Tanenbaum, Daniel Civello, Fu Lu, Brian Murphy, Steve Ferriera, Gary Wang, Xianqgun Zheng, Thomas J. White, John J. Sninsky, Mark D. Adams, Michele Cargill. 2003. Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science, 302: 1960-1963.
- Liliana Florea, Valentina Di Francesco, Jason Miller, Russell Turner, Alison Yao, Michael Harris, Brian Walenz, Clark Mobarry, Gennady V. Merkulov, Rosane Charlab, Ian Dew, Zuoming Deng, Sorin Istrail, Peter Li, Granger Sutton. Gene and Alternative Splicing Annotation with AIR. Genome Res., 15:54-66.
- Venter, J.C. et al. 2002. The Sequence of the Human Genome. Science, 291: 1304-1351.
Supplementary Materials
Supplementary Materials