Liliana Florea, Valentina Di Francesco, Jason Miller, Russell Turner, Alison Yao, Michael Harris, Brian Walenz, Clark Mobarry, Gennady V. Merkulov, Rosane Charlab, Ian Dew, Zuoming Deng, Sorin Istrail, Peter Li, Granger Sutton. Gene and Alternative Splicing Annotation with AIR.Genome Res., 15:54-66.
AIR is a computational process for annotating genes and alternatively spliced transcripts in eukaryotic genomes based on genomic alignments of cDNA and protein sequences from the same species or projected from a closely related species via whole genome alignments. Please follow the links below to download the associated code and supplemental material.
AIR.tar.gz