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PANTHER Subfamily Information   
Subfamily: VALYL-TRNA SYNTHETASE (PTHR11946:SF5)
Family: ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES
PANTHER Links:
Tree  Multiple Sequence Alignment
Tree  MSA
Abstract:

The aminoacyl-tRNA synthetases (EC: 6.1.1.-) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology [PMID:2203971]. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric [PMID:10673435], while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [PMID:8364025], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases [PUB00015156].

The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases.

The aminoacyl-tRNA synthetases (EC: 6.1.1.-) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology [PMID:2203971]. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric [PMID:10673435], while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [PMID:8364025], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases [PUB00015156].

The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases.

Valyl-tRNA synthetase (EC: 6.1.1.9) is an alpha monomer that belongs to class Ia.


InterPro Accession: IPR002303
PANTHER Molecular Function: Synthase and synthetase
   Synthetase
          Aminoacyl-tRNA synthetase
Ligase

PANTHER Biological Process: Protein metabolism and modification
   Amino acid activation

Pathway Categories: No pathway information available
Training Sequences: 59
HMM Length 948
Downloads: HMM (HMMER format)

Genes assigned to this Subfamily
  Total Celera FlyBase NCBI
H. sapiens 4 2 0 2
M. musculus 4 2 0 2
R. norvegicus 5 3 0 2
D. melanogaster 2 0 2 0
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