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PANTHER Subfamily Information   
Subfamily: ARGININE DECARBOXYLASE (PTHR11482:SF3)
Family: ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
PANTHER Links:
Tree  Multiple Sequence Alignment
Tree  MSA
Abstract: Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity [PMID:3143046, PMID:8181483]. One of these families includes eukaryotic ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine.

Although these proteins, which are known collectively as group IV decarboxylases [PMID:8181483], probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. The tomato ADC gene contains an open reading frame encoding a polypeptide of 502 amino acids and a predicted molecular mass of ~55 kD [PMID:8022938]. The predicted amino acid sequence shares 47 and 38% identify with oat and Escherichia coli ADCs, respectively. Gel blot hybridisation experiments show that, in tomato, ADC is encoded by a single gene and is expressed as a transcript of ~2.2 kb in the fruit pericarp and leaf tissues [PMID:8022938].


InterPro Accession: IPR002985
PANTHER Molecular Function: Lyase
   Decarboxylase

PANTHER Biological Process: Amino acid metabolism
   Amino acid biosynthesis

Pathway Categories: No pathway information available
Training Sequences: 7
HMM Length 573
Downloads: HMM (HMMER format)

Genes assigned to this Subfamily
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