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PANTHER Subfamily Information   
Subfamily: HISTONE DEACETYLASE 1, 2 ,3 (PTHR10625:SF28)
Family: HISTONE DEACETYLASE
PANTHER Links:
Tree  Multiple Sequence Alignment
Tree  MSA
Abstract: Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily [PMID:9278492].

HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [PMID:10322454, PMID:10072350], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 [PMID:10322454]. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression [PMID:10072350]. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements [PMID:9278492]. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [PMID:10072350, PMID:10322142].

HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [PMID:10322454, PMID:10072350], and are also believed to deacetylate general transcription factors such as TFIIF and sequence- specific transcription factors such as p53 [PMID:10322454]. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positive charge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements [PMID:9278492]. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [PMID:10072350, PMID:10322142].


InterPro Accession: IPR003084
PANTHER Molecular Function: Nucleic acid binding
Hydrolase
   Deacetylase

PANTHER Biological Process: Nucleoside, nucleotide and nucleic acid metabolism
   mRNA transcription
          mRNA transcription regulation
Apoptosis
   Inhibition of apoptosis
Cell cycle
   Cell cycle control

Pathway Categories: p53 pathway
   Histon deacetylase 1
Wnt signaling pathway
   Histone deacetylase
Training Sequences: 64
HMM Length 444
Downloads: HMM (HMMER format)

Genes assigned to this Subfamily
  Total Celera FlyBase NCBI
H. sapiens 8 5 0 3
M. musculus 15 9 0 6
R. norvegicus 11 4 0 7
D. melanogaster 2 0 2 0
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