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DNA is the biological information that instructs cells how to exist in an
ordered fashion: accurate replication is thus one of the most important
events in the life cycle of a cell. This function is performed by DNA-
directed DNA-polymerases (EC: 2.7.7.7) by adding nucleotide triphosphate (dNTP) residues
to the 5'-end of the growing chain of DNA, using a complementary DNA chain
as a template. Small RNA molecules are generally used as primers for chain
elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain.
Even though there
are 2 different methods of priming, these are mediated by 2 very similar
polymerases classes, A and B, with similar methods of chain elongation.
A number of DNA polymerases have been grouped
under the designation of DNA polymerase family B.
Six regions of similarity (numbered from I to VI) are found in all or a subset
of the B family polymerases. The most conserved region (I) includes a conserved
tetrapeptide with two aspartate residues. Its function is not yet known.
However, it has been suggested [PMID:2461550] that it may be involved in binding a
magnesium ion. All sequences in the B
family contain a characteristic DTDS motif, and possess many functional
domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [PMID:8679562],
a DNA binding domain, and binding domains for both dNTP's and pyrophosphate [PMID:9757117].
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