Genes and orthologs
Whole genome function views
How to cite PANTHER
Recent publication describing PANTHER
PANTHER tools are now supporting all 82 organisms.
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PANTHER HMM library Version 8.0
Contains the PANTHER HMMs for 7729 protein family HMMs, divided into 69,465 functionally distinct protein subfamily HMMs. The PANTHER HMMs are in the
format. There is also a version of the library available that can be used for the Coding SNP Analysis tool.
release date November 16, 2012
PANTHER HMM Scoring tool
Download the PANTHER scoring tool, to score protein sequences against the entire PANTHER HMM library and analyze your sequences.
release date May 25, 2011
PANTHER Coding SNP Analysis tool
Download the PANTHER Coding SNP Analysis tool to estimate the likelihood that a particular nonsynonymous (amino-acid changing) coding SNP will cause a functional impact to the protein.
release date May 25, 2011
GIGA is an efficient tree building program that allows phylogenetic reconstruction of very large gene families and determination of orthologs on a large scale. It is used to generate trees in the PANTHER Classification System.
release date August 15, 2011
PANTHER Pathway 3.2
Contains 176 regulatory and metabolic pathways, each with subfamilies and protein sequences mapped to individual pathway components. All pathway diagrams are abailable in both SBML and BioPAX level 3 format. SBML files, BioPAX files and Protein Sequence Association data are available for download.
PANTHER sequence classification files
Contains the PANTHER family, subfamily, molecular function, biological process, and pathway classifications for the the complete proteomes derived from the human, mouse, rat and Drosophila melanogaster genomes, as well as the classifications of all proteins in the UniProt dataset.
PANTHER HMM Classification file
Contains the PANTHER family/subfamily name, and the molecular function, biological process, and pathway classifications for every PANTHER protein family and subfamily in PANTHER HMM library Version 8.0.
PAINT is a java application for viewing tree files. Minimum Java version 1.4 required. To install, uncompress the download file and execute launchTAV.bat for windows or sh launchTAV.sh for MAC.
CellDesigner™ is a software program for drawing pathway networks and capture molecular events using controlled graphic notations. The diagrams generated by Cell Designer are stored in SBML (Systems Biology Markup Language) format, and can be shared by other software that supports the same standard.
© Copyright 2012 Paul Thomas All Rights Reserved.